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MusaBase

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Headings

H1 H2 H3 H4 H5 H6
0 2 106 97 0 0
  • [H2] Individual Crosses:
  • [H2] Group of Crosses:
  • [H3] Thank you :-)
  • [H3] Breeding programs
  • [H3] Phenotyping
  • [H3] East African Highland
  • [H3] bananas project & Partners
  • [H3] New to the database?
  • [H3] This workflow will guide you through tissue sampling an experiment
  • [H3] At which level do you plan to keep track of your sampling?
  • [H3] Select a field trial
  • [H3] Plant entries in your field trial
  • [H3] Create tissue sample entries for this trial
  • [H3] Complete! You have all the entities you need to conduct your sampling.
  • [H3] Complete! You have all the entities you need to conduct your sampling.
  • [H3] This workflow will guide you through uploading a new trial or trials into the database
  • [H3] Enter information about the experiment and upload your trial layout
  • [H3] Is your trial linked with other field trials, genotyping plates, or crossing experiments in the database? If you are unsure, you can skip this. This information can be added from the trial detail page after the trial is saved.
  • [H3] Fixing the missing accession(s) problem
  • [H3] Trial Upload Error Messages
  • [H3] Fixing the missing seedlot(s) problem
  • [H3] Trial Upload Error Messages
  • [H3] Submit your trial again. You should have corrected all errors by now, but if not please take a look at the errors in the red box below. You can continue to modify your file and then click Upload until it works.
  • [H3] There exist these problems in your file:
  • [H3] Finished! Your trial is now in the database
  • [H3] Finished! Your trial is now in the database
  • [H3] This workflow will guide you through designing a new trial in the database
  • [H3] Enter basic information about the trial
  • [H3] Design your trial layout
  • [H3] Is your trial linked with other field trials, genotyping plates, or crossing experiments in the database? If you are unsure, you can skip this. This information can be added from the trial detail page after the trial is saved.
  • [H3] Specify the number of rows and columns for the entire field
  • [H3] If you want to change the way in which plot names will be generated by the database
  • [H3] Review the generated trial layout. Make sure to click Submit at the bottom of this page if you approve of the trial!
  • [H3] Complete! Your trial was saved in the database.
  • [H3] Complete! Your trial was saved in the database.
  • [H3] This workflow will guide you through uploading genotypes into the database
  • [H3] Select the type of genotyping data being uploaded
  • [H3] Select the genotyping project or create a new one. A genotyping project is a specific genotyping event. You can have many genotyping projects under the same genotyping protocol to indicate that those genotyping events used the same markers.
  • [H3] Provide info about the genotyping protocol used. The genotyping protocol represents a specific instance of how genotypes were called for a set of markers in a genotyping platform. Many genotyping projects can use the same genotyping protocol.
  • [H3] Provide genotype information
  • [H3] Finalize and submit your genotyping data
  • [H3] Complete! Your genotyping data was saved in the database.
  • [H3] This workflow will guide you through adding a genotyping plate in the database
  • [H3] Select a genotyping project
  • [H3] Provide info about your plate
  • [H3] Provide information about the wells in your plate
  • [H3] You want to upload an existing plate layout
  • [H3] You want to upload a Coordinate Android Application file.
  • [H3] You want to upload a Custom Android Application file.
  • [H3] You want to design a completely new plate.
  • [H3] Is your genotyping plate linked with field trials in the database? This information can also be added from the genotyping plate detail page once the trial is saved in the database.
  • [H3] Finalize and submit your genotyping plate
  • [H3] Complete! Your genotyping plate was saved in the database.
  • [H3] Complete! Your genotyping plate was saved in the database.
  • [H3] What is a seedlot inventory?
  • [H3] Make sure you are collecting seedlot inventory in the following format
  • [H3] Select your file and upload seedlot inventory
  • [H3] Fixing the missing seedlot(s) problem
  • [H3] Seedlot Inventory Upload Error Messages
  • [H3] Submit your inventory again. You should have corrected all errors by now, but if not please take a look at the errors in the red box below. You can continue to modify your file and then click Upload until it works.
  • [H3] There exist these problems in your file:
  • [H3] Finished! Your seedlot inventory is in the database
  • [H3] Finished! Your seedlot inventory is in the database
  • [H3] The trial was saved to the database with no errors!
  • [H3] What are seedlots?
  • [H3] Seedlots fall into two categories
  • [H3] Make sure your file matches the correct file format
  • [H3] Provide basic information about the seedlots and upload your file
  • [H3] Fix all errors in your file
  • [H3] Seedlot Upload Error Messages
  • [H3] Submit your seedlots again. You should have corrected all errors by now, but if not please take a look at the errors in the red box below. You can continue to modify your file and then click Upload until it works.
  • [H3] There exist these problems in your file:
  • [H3] Finished! Your seedlots are now in the database
  • [H3] Finished! Your seedlots are now in the database
  • [H3] Add the missing accessions to a list
  • [H3] Introduction
  • [H3] Select a crossing experiment for your crosses
  • [H3] Enter basic information about the crosses and upload your file
  • [H3] Additional options:
  • [H3] Finished! Your crosses are now in the database
  • [H3] Finished! Your crosses are now in the database
  • [H3] What is a cross?
  • [H3] Select a crossing experiment
  • [H3] Enter basic information about the cross
  • [H3] Enter basic information about the cross
  • [H3] Optional: If you choose to record exact cross parents, you can do so.
  • [H3] Optional: If you choose to record exact cross female parent, you can do so.
  • [H3] If you would like to add auto-generated progeny names for this cross, you can add it here
  • [H3] Optional:
  • [H3] Finished! Your cross is now in the database
  • [H3] Finished! Your cross is now in the database
  • [H3] What are crossing experiments?
  • [H3] Enter basic information about the crossing experiment
  • [H3] Finished! Your crossing experiment is now in the database
  • [H3] Finished! Your crossing experiment is now in the database
  • [H3] Your Lists
  • [H3] Elements not found:
  • [H3] Optional: Add Missing Accessions to A List
  • [H3] Mismatched case
  • [H3] Multiple mismatched case
  • [H3] List elements matching a synonym
  • [H3] Multiple synonym matches
  • [H3] Your Datasets
  • [H3] Elements not found:
  • [H3] Login
  • [H3] Forgot Username
  • [H3] Reset Password
  • [H3] Create New User
  • [H4] Old browser version detected
  • [H4] This site is best viewed with:
  • [H4] What are you interested in? For General Help
  • [H4] Upload an experimental field trial into the database that you have saved on your computer in Excel
  • [H4] Design a completely new experimental field trial in the database
  • [H4] Catalog your available seed inventory into the database
  • [H4] Upload phenotypic data into the database that you have saved on your computer in Excel
  • [H4] Plan tissue sampling
  • [H4] Upload crosses and crossing information into the database
  • [H4] Print barcode labels for my experiment (for your plots or plants or tissue samples in the field, or for your 96 well plate and tissue samples)
  • [H4] Analyze phenotypic performance across trials
  • [H4] Prepare a 96 or 384 well plate for a genotyping experiment
  • [H4] Upload VCF genotypic data
  • [H4] Tissue Sampling
  • [H4] Field trial is not relevant for the type of tissue sampling you selected. Go to next step.
  • [H4] Plant entries not relevant for the type of tissue sampling you selected. Go to next step.
  • [H4] Plant entries exist for this trial. Go to next step.
  • [H4] Please create plant entries for this trial.
  • [H4] Field trial tissue sample entries not relevant for the type of tissue sampling you selected. Go to next step.
  • [H4] Tissue sample entries exist for this trial. Go to next step.
  • [H4] Workflow for seedlot inventory
  • [H4] I have new seedlots that need to be added into the database.
  • [H4] I conducted an inventory (in weight(g)) and want to update the database to reflect the current state of the inventory.
  • [H4] Workflow for uploading phenotypes
  • [H4] Workflow for trial barcoding
  • [H4] Workflow for comparing one or many trials
  • [H4] Upload Existing Trial(s)
  • [H4] Upload Template Information
  • [H4] Upload Template Information
  • [H4] Upload Trial Metadata
  • [H4] Upload Trial Metadata Template Information
  • [H4] Design New Trial
  • [H4] Which accessions will be in the field?
  • [H4] Which crosses will be in the field?
  • [H4] Which family names will be in the field?
  • [H4] Number of Plants:
  • [H4] Number of Columns (required):
  • [H4] Number of columns between two check columns (Optional):
  • [H4] Which seedlots will you grow in the field? This is optional and can be decided later. If you do not know exactly which seedlot packets you will be planting at this time, you can add this information on the Trial Detail Page after the trial has been saved in the database.
  • [H4] Add Field Management Factor to Design
  • [H4] Add Field Management Factor to Design
  • [H4] Partially Replicated Design Usage Help
  • [H4] Background:
  • [H4] Design Parameters:
  • [H4] NOTE:
  • [H4] Upload Genotypes
  • [H4] Upload VCF Template Information
  • [H4] Upload Intertek Template Information
  • [H4] Upload Tassel HDF5 Template Information
  • [H4] Upload SSR Marker Info Template Information
  • [H4] Upload SSR Marker Info Error
  • [H4] Success
  • [H4] Upload SSR Protocol (Marker Info)
  • [H4] Upload SSR Data Template Information
  • [H4] Upload KASP data Template Information
  • [H4] Add Genotyping Plate
  • [H4] Upload Template Information
  • [H4] Upload Template Information
  • [H4] Upload Template Information
  • [H4] Upload Seedlot Inventory
  • [H4] Upload Template Information
  • [H4] Upload Seedlots
  • [H4] Upload Template Information For Named Accessions
  • [H4] Upload Template Information For Harvested Seedlots
  • [H4] Create New Seedlot
  • [H4] OR
  • [H4] Add Accessions
  • [H4] Upload Accessions Template Information
  • [H4] Accessions to be Added
  • [H4] Fuzzy Matches
  • [H4] Found Accessions
  • [H4] Accessions Saved
  • [H4] Upload Crosses
  • [H4] Upload Crosses File Error
  • [H4] Template Information
  • [H4] Add New Cross
  • [H4] Template Information
  • [H4] Success
  • [H4] Add New Crossing Experiment
  • [H4] Please Note: Website Data Usage Policy
  • [H4] MusaBase adheres to the Toronto agreement on prepublication data release
  • [H4] Featured Publication
  • [H4] Public Lists
  • [H4] List Contents
  • [H4] List Validation Report: Failed
  • [H4] Fuzzy Search Results
  • [H4] Synonym Search Results
  • [H4] Available Seedlots
  • [H4] Public Datasets
  • [H4] Dataset Contents
  • [H4] Dataset Validation Failed
  • [H4] Your Calendar
  • [H4] Add New Event
  • [H4] Event Info
  • [H4] Edit Event
  • [H4] Working
  • [H4] Progress

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Anchor Type Juice
order Interno Passing Juice
MusaBase Interno Passing Juice
Wizard Interno Passing Juice
Accessions and Plots Interno Passing Juice
Organisms Interno Passing Juice
Progenies and Crosses Interno Passing Juice
Field Trials Interno Passing Juice
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Locations Interno Passing Juice
Accessions Interno Passing Juice
Seed Lots Interno Passing Juice
Crosses Interno Passing Juice
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Genotyping Plates Interno Passing Juice
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Field Book App Interno Passing Juice
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Identifier Generation Interno Passing Juice
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Compare Trials Interno Passing Juice
Graphical Filtering Interno Passing Juice
Selection Index Interno Passing Juice
Genomic Selection Interno Passing Juice
Accession Usage Interno Passing Juice
Mixed Models Interno Passing Juice
Heritability Interno Passing Juice
Stability AMMI Interno Passing Juice
GWAS Interno Passing Juice
BoxPlotter Interno Passing Juice
Image Analysis Interno Passing Juice
BLAST Interno Passing Juice
Ontology Browser Interno Passing Juice
Compose a New Trait Interno Passing Juice
Musa acuminata genome Interno Passing Juice
Nematode screening Interno Passing Juice
Weevil screening Interno Passing Juice
Sigatoka resistance screening Interno Passing Juice
Xvm resistance screening Interno Passing Juice
FOC-R1 resistances screening (Glasshouse) Interno Passing Juice
Phenotyping for FOC-R1 Interno Passing Juice
Phenotyping for Sigatoka Interno Passing Juice
Phenotyping for BXW Interno Passing Juice
Sigatoka and Fusarium Collection Interno Passing Juice
About Interno Passing Juice
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Cite Musabase Interno Passing Juice
Manual Externo Passing Juice
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Twitter Externo Passing Juice
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Make crosses Interno Passing Juice
Manage trials tutorials @ SGN Externo Passing Juice
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MGIS Externo Passing Juice
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Taxonomy browser Externo Passing Juice
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants Externo Passing Juice
Browse the banana genome Externo Passing Juice
BLAST search Externo Passing Juice
Download reference genome Externo Passing Juice
NARO Uganda Externo Passing Juice
Mueller lab @BTI Externo Passing Juice
For General Help Externo Passing Juice
Single Trial Design Interno Passing Juice
Multiple Trial Designs Interno Passing Juice
Inventory Externo Passing Juice
Using Lists Interno Passing Juice
Uploading a File Interno Passing Juice
data usage policy Interno Passing Juice
Zoom Link Externo Passing Juice
NARO: New Banana Breed Are Disease Resistant Externo Passing Juice
See all news... Interno Passing Juice
Genomic Prediction in a Multiploid Crop: Genotype by Environment Interaction and Allele Dosage Effects on Predictive Ability in Banana Externo Passing Juice
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BreedBase Workshop at PAG 32 Externo Passing Juice
PAG 32 Externo Passing Juice
See all events... Interno Passing Juice
BTRACT Externo Passing Juice
Breeding Better Bananas Project Externo Passing Juice
Southgreen Banana Genome Hub Externo Passing Juice
MGIS Externo Passing Juice
Musapedia Externo Passing Juice
Farm Radio Externo Passing Juice
IITA banana program Externo Passing Juice
Ugandan banana research portal Externo Passing Juice
Product profiles Interno Passing Juice
Int'l Society for Tropical Root Crops Externo Passing Juice
PDF Interno Passing Juice
Documentation Externo Passing Juice
Videos Interno Passing Juice
'+response[i].title+' Interno Passing Juice
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trial 159
file 139
database 107
name 95
field 86

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