musabase.org

Website review musabase.org

 Generated on March 26 2025 12:47 PM

Old data? UPDATE !

The score is 41/100

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MusaBase

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Headings

H1 H2 H3 H4 H5 H6
0 2 106 97 0 0
  • [H2] Individual Crosses:
  • [H2] Group of Crosses:
  • [H3] Thank you :-)
  • [H3] Breeding programs
  • [H3] Phenotyping
  • [H3] East African Highland
  • [H3] bananas project & Partners
  • [H3] New to the database?
  • [H3] This workflow will guide you through tissue sampling an experiment
  • [H3] At which level do you plan to keep track of your sampling?
  • [H3] Select a field trial
  • [H3] Plant entries in your field trial
  • [H3] Create tissue sample entries for this trial
  • [H3] Complete! You have all the entities you need to conduct your sampling.
  • [H3] Complete! You have all the entities you need to conduct your sampling.
  • [H3] This workflow will guide you through uploading a new trial or trials into the database
  • [H3] Enter information about the experiment and upload your trial layout
  • [H3] Is your trial linked with other field trials, genotyping plates, or crossing experiments in the database? If you are unsure, you can skip this. This information can be added from the trial detail page after the trial is saved.
  • [H3] Fixing the missing accession(s) problem
  • [H3] Trial Upload Error Messages
  • [H3] Fixing the missing seedlot(s) problem
  • [H3] Trial Upload Error Messages
  • [H3] Submit your trial again. You should have corrected all errors by now, but if not please take a look at the errors in the red box below. You can continue to modify your file and then click Upload until it works.
  • [H3] There exist these problems in your file:
  • [H3] Finished! Your trial is now in the database
  • [H3] Finished! Your trial is now in the database
  • [H3] This workflow will guide you through designing a new trial in the database
  • [H3] Enter basic information about the trial
  • [H3] Design your trial layout
  • [H3] Is your trial linked with other field trials, genotyping plates, or crossing experiments in the database? If you are unsure, you can skip this. This information can be added from the trial detail page after the trial is saved.
  • [H3] Specify the number of rows and columns for the entire field
  • [H3] If you want to change the way in which plot names will be generated by the database
  • [H3] Review the generated trial layout. Make sure to click Submit at the bottom of this page if you approve of the trial!
  • [H3] Complete! Your trial was saved in the database.
  • [H3] Complete! Your trial was saved in the database.
  • [H3] This workflow will guide you through uploading genotypes into the database
  • [H3] Select the type of genotyping data being uploaded
  • [H3] Select the genotyping project or create a new one. A genotyping project is a specific genotyping event. You can have many genotyping projects under the same genotyping protocol to indicate that those genotyping events used the same markers.
  • [H3] Provide info about the genotyping protocol used. The genotyping protocol represents a specific instance of how genotypes were called for a set of markers in a genotyping platform. Many genotyping projects can use the same genotyping protocol.
  • [H3] Provide genotype information
  • [H3] Finalize and submit your genotyping data
  • [H3] Complete! Your genotyping data was saved in the database.
  • [H3] This workflow will guide you through adding a genotyping plate in the database
  • [H3] Select a genotyping project
  • [H3] Provide info about your plate
  • [H3] Provide information about the wells in your plate
  • [H3] You want to upload an existing plate layout
  • [H3] You want to upload a Coordinate Android Application file.
  • [H3] You want to upload a Custom Android Application file.
  • [H3] You want to design a completely new plate.
  • [H3] Is your genotyping plate linked with field trials in the database? This information can also be added from the genotyping plate detail page once the trial is saved in the database.
  • [H3] Finalize and submit your genotyping plate
  • [H3] Complete! Your genotyping plate was saved in the database.
  • [H3] Complete! Your genotyping plate was saved in the database.
  • [H3] What is a seedlot inventory?
  • [H3] Make sure you are collecting seedlot inventory in the following format
  • [H3] Select your file and upload seedlot inventory
  • [H3] Fixing the missing seedlot(s) problem
  • [H3] Seedlot Inventory Upload Error Messages
  • [H3] Submit your inventory again. You should have corrected all errors by now, but if not please take a look at the errors in the red box below. You can continue to modify your file and then click Upload until it works.
  • [H3] There exist these problems in your file:
  • [H3] Finished! Your seedlot inventory is in the database
  • [H3] Finished! Your seedlot inventory is in the database
  • [H3] The trial was saved to the database with no errors!
  • [H3] What are seedlots?
  • [H3] Seedlots fall into two categories
  • [H3] Make sure your file matches the correct file format
  • [H3] Provide basic information about the seedlots and upload your file
  • [H3] Fix all errors in your file
  • [H3] Seedlot Upload Error Messages
  • [H3] Submit your seedlots again. You should have corrected all errors by now, but if not please take a look at the errors in the red box below. You can continue to modify your file and then click Upload until it works.
  • [H3] There exist these problems in your file:
  • [H3] Finished! Your seedlots are now in the database
  • [H3] Finished! Your seedlots are now in the database
  • [H3] Add the missing accessions to a list
  • [H3] Introduction
  • [H3] Select a crossing experiment for your crosses
  • [H3] Enter basic information about the crosses and upload your file
  • [H3] Additional options:
  • [H3] Finished! Your crosses are now in the database
  • [H3] Finished! Your crosses are now in the database
  • [H3] What is a cross?
  • [H3] Select a crossing experiment
  • [H3] Enter basic information about the cross
  • [H3] Enter basic information about the cross
  • [H3] Optional: If you choose to record exact cross parents, you can do so.
  • [H3] Optional: If you choose to record exact cross female parent, you can do so.
  • [H3] If you would like to add auto-generated progeny names for this cross, you can add it here
  • [H3] Optional:
  • [H3] Finished! Your cross is now in the database
  • [H3] Finished! Your cross is now in the database
  • [H3] What are crossing experiments?
  • [H3] Enter basic information about the crossing experiment
  • [H3] Finished! Your crossing experiment is now in the database
  • [H3] Finished! Your crossing experiment is now in the database
  • [H3] Your Lists
  • [H3] Elements not found:
  • [H3] Optional: Add Missing Accessions to A List
  • [H3] Mismatched case
  • [H3] Multiple mismatched case
  • [H3] List elements matching a synonym
  • [H3] Multiple synonym matches
  • [H3] Your Datasets
  • [H3] Elements not found:
  • [H3] Login
  • [H3] Forgot Username
  • [H3] Reset Password
  • [H3] Create New User
  • [H4] Old browser version detected
  • [H4] This site is best viewed with:
  • [H4] What are you interested in? For General Help
  • [H4] Upload an experimental field trial into the database that you have saved on your computer in Excel
  • [H4] Design a completely new experimental field trial in the database
  • [H4] Catalog your available seed inventory into the database
  • [H4] Upload phenotypic data into the database that you have saved on your computer in Excel
  • [H4] Plan tissue sampling
  • [H4] Upload crosses and crossing information into the database
  • [H4] Print barcode labels for my experiment (for your plots or plants or tissue samples in the field, or for your 96 well plate and tissue samples)
  • [H4] Analyze phenotypic performance across trials
  • [H4] Prepare a 96 or 384 well plate for a genotyping experiment
  • [H4] Upload VCF genotypic data
  • [H4] Tissue Sampling
  • [H4] Field trial is not relevant for the type of tissue sampling you selected. Go to next step.
  • [H4] Plant entries not relevant for the type of tissue sampling you selected. Go to next step.
  • [H4] Plant entries exist for this trial. Go to next step.
  • [H4] Please create plant entries for this trial.
  • [H4] Field trial tissue sample entries not relevant for the type of tissue sampling you selected. Go to next step.
  • [H4] Tissue sample entries exist for this trial. Go to next step.
  • [H4] Workflow for seedlot inventory
  • [H4] I have new seedlots that need to be added into the database.
  • [H4] I conducted an inventory (in weight(g)) and want to update the database to reflect the current state of the inventory.
  • [H4] Workflow for uploading phenotypes
  • [H4] Workflow for trial barcoding
  • [H4] Workflow for comparing one or many trials
  • [H4] Upload Existing Trial(s)
  • [H4] Upload Template Information
  • [H4] Upload Template Information
  • [H4] Upload Trial Metadata
  • [H4] Upload Trial Metadata Template Information
  • [H4] Design New Trial
  • [H4] Which accessions will be in the field?
  • [H4] Which crosses will be in the field?
  • [H4] Which family names will be in the field?
  • [H4] Number of Plants:
  • [H4] Number of Columns (required):
  • [H4] Number of columns between two check columns (Optional):
  • [H4] Which seedlots will you grow in the field? This is optional and can be decided later. If you do not know exactly which seedlot packets you will be planting at this time, you can add this information on the Trial Detail Page after the trial has been saved in the database.
  • [H4] Add Field Management Factor to Design
  • [H4] Add Field Management Factor to Design
  • [H4] Partially Replicated Design Usage Help
  • [H4] Background:
  • [H4] Design Parameters:
  • [H4] NOTE:
  • [H4] Upload Genotypes
  • [H4] Upload VCF Template Information
  • [H4] Upload Intertek Template Information
  • [H4] Upload Tassel HDF5 Template Information
  • [H4] Upload SSR Marker Info Template Information
  • [H4] Upload SSR Marker Info Error
  • [H4] Success
  • [H4] Upload SSR Protocol (Marker Info)
  • [H4] Upload SSR Data Template Information
  • [H4] Upload KASP data Template Information
  • [H4] Add Genotyping Plate
  • [H4] Upload Template Information
  • [H4] Upload Template Information
  • [H4] Upload Template Information
  • [H4] Upload Seedlot Inventory
  • [H4] Upload Template Information
  • [H4] Upload Seedlots
  • [H4] Upload Template Information For Named Accessions
  • [H4] Upload Template Information For Harvested Seedlots
  • [H4] Create New Seedlot
  • [H4] OR
  • [H4] Add Accessions
  • [H4] Upload Accessions Template Information
  • [H4] Accessions to be Added
  • [H4] Fuzzy Matches
  • [H4] Found Accessions
  • [H4] Accessions Saved
  • [H4] Upload Crosses
  • [H4] Upload Crosses File Error
  • [H4] Template Information
  • [H4] Add New Cross
  • [H4] Template Information
  • [H4] Success
  • [H4] Add New Crossing Experiment
  • [H4] Please Note: Website Data Usage Policy
  • [H4] MusaBase adheres to the Toronto agreement on prepublication data release
  • [H4] Featured Publication
  • [H4] Public Lists
  • [H4] List Contents
  • [H4] List Validation Report: Failed
  • [H4] Fuzzy Search Results
  • [H4] Synonym Search Results
  • [H4] Available Seedlots
  • [H4] Public Datasets
  • [H4] Dataset Contents
  • [H4] Dataset Validation Failed
  • [H4] Your Calendar
  • [H4] Add New Event
  • [H4] Event Info
  • [H4] Edit Event
  • [H4] Working
  • [H4] Progress

Images

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In-page links

We found a total of 121 links including 14 link(s) to files

Anchor Type Juice
order Internal Passing Juice
MusaBase Internal Passing Juice
Wizard Internal Passing Juice
Accessions and Plots Internal Passing Juice
Organisms Internal Passing Juice
Progenies and Crosses Internal Passing Juice
Field Trials Internal Passing Juice
Genotyping Plates Internal Passing Juice
Genotyping Data Projects Internal Passing Juice
Genotyping Protocols Internal Passing Juice
Accessions Using Genotypes Internal Passing Juice
Traits Internal Passing Juice
Markers Internal Passing Juice
Images Internal Passing Juice
People Internal Passing Juice
FAQ Internal Passing Juice
FTP Data Internal Passing Juice
User Roles Internal Passing Juice
Breeding Programs Internal Passing Juice
Locations Internal Passing Juice
Accessions Internal Passing Juice
Seed Lots Internal Passing Juice
Crosses Internal Passing Juice
Field Trials Internal Passing Juice
Genotyping Plates Internal Passing Juice
Tissue Samples Internal Passing Juice
Field Book App Internal Passing Juice
Phenotyping Internal Passing Juice
Barcodes Internal Passing Juice
Label Designer Internal Passing Juice
NIRS Internal Passing Juice
Markerset Internal Passing Juice
Download Internal Passing Juice
Upload Internal Passing Juice
ODK Data Collection Internal Passing Juice
Identifier Generation Internal Passing Juice
Stored Analyses Internal Passing Juice
Compare Trials Internal Passing Juice
Graphical Filtering Internal Passing Juice
Selection Index Internal Passing Juice
Genomic Selection Internal Passing Juice
Accession Usage Internal Passing Juice
Mixed Models Internal Passing Juice
Heritability Internal Passing Juice
Stability AMMI Internal Passing Juice
GWAS Internal Passing Juice
BoxPlotter Internal Passing Juice
Image Analysis Internal Passing Juice
BLAST Internal Passing Juice
Ontology Browser Internal Passing Juice
Compose a New Trait Internal Passing Juice
Musa acuminata genome Internal Passing Juice
Nematode screening Internal Passing Juice
Weevil screening Internal Passing Juice
Sigatoka resistance screening Internal Passing Juice
Xvm resistance screening Internal Passing Juice
FOC-R1 resistances screening (Glasshouse) Internal Passing Juice
Phenotyping for FOC-R1 Internal Passing Juice
Phenotyping for Sigatoka Internal Passing Juice
Phenotyping for BXW Internal Passing Juice
Sigatoka and Fusarium Collection Internal Passing Juice
About Internal Passing Juice
Contact Internal Passing Juice
Cite Musabase Internal Passing Juice
Manual External Passing Juice
Video tutorials External Passing Juice
Database statistics Internal Passing Juice
Forum Internal Passing Juice
Twitter External Passing Juice
Facebook External Passing Juice
Design and create breeding trials Internal Passing Juice
Upload accessions Internal Passing Juice
Make crosses Internal Passing Juice
Manage trials tutorials @ SGN External Passing Juice
Use search & list tutorials @ SGN External Passing Juice
MGIS External Passing Juice
Search accessions External Passing Juice
Search germplasm collection External Passing Juice
Taxonomy browser External Passing Juice
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants External Passing Juice
Browse the banana genome External Passing Juice
BLAST search External Passing Juice
Download reference genome External Passing Juice
NARO Uganda External Passing Juice
Mueller lab @BTI External Passing Juice
For General Help External Passing Juice
Single Trial Design Internal Passing Juice
Multiple Trial Designs Internal Passing Juice
Inventory External Passing Juice
Using Lists Internal Passing Juice
Uploading a File Internal Passing Juice
data usage policy Internal Passing Juice
Zoom Link External Passing Juice
NARO: New Banana Breed Are Disease Resistant External Passing Juice
See all news... Internal Passing Juice
Genomic Prediction in a Multiploid Crop: Genotype by Environment Interaction and Allele Dosage Effects on Predictive Ability in Banana External Passing Juice
See all publications... Internal Passing Juice
BreedBase Workshop at PAG 32 External Passing Juice
PAG 32 External Passing Juice
See all events... Internal Passing Juice
BTRACT External Passing Juice
Breeding Better Bananas Project External Passing Juice
Southgreen Banana Genome Hub External Passing Juice
MGIS External Passing Juice
Musapedia External Passing Juice
Farm Radio External Passing Juice
IITA banana program External Passing Juice
Ugandan banana research portal External Passing Juice
Product profiles Internal Passing Juice
Int'l Society for Tropical Root Crops External Passing Juice
PDF Internal Passing Juice
Documentation External Passing Juice
Videos Internal Passing Juice
'+response[i].title+' Internal Passing Juice
'+d.seedlot[0]+' Internal Passing Juice
'+d.contents[0]+' Internal Passing Juice
" + event.title + " Internal Passing Juice
" + event.property + " Internal Passing Juice
" + event.event_url + " Internal Passing Juice
Export External Passing Juice
directory search Internal Passing Juice

SEO Keywords

Keywords Cloud

genotyping number trial file upload plot name database field information

Keywords Consistency

Keyword Content Title Keywords Description Headings
trial 159
file 139
database 107
name 95
field 86

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Url

Domain : musabase.org

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